Representing bioinformatics Nextflow workflows in RO-Crate : challenges and opportunities - Laboratoire Interdisciplinaire des Sciences du Numérique Access content directly
Conference Poster Year : 2024

Representing bioinformatics Nextflow workflows in RO-Crate : challenges and opportunities

Abstract

This research was conducted as part of the ShareFAIR project dedicated to assisting bioinformaticians in creating, comparing, and exchanging robust analysis workflows for multi- scale datasets related to neuro-vascular pathologies. ShareFAIR partners use workflows from diverse types of systems. One important challenge lies in uniformly and simply representing workflows such that partners can understand, share and reuse them. The aim of this research is to evaluate how the standards currently available, especially RO-Crate, allow to represent workflows.
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Dates and versions

hal-04540040 , version 1 (10-04-2024)

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Cite

George Marchment, Marie Schmit, Clémence Sebe, Frédéric Lemoine, Hervé Ménager, et al.. Representing bioinformatics Nextflow workflows in RO-Crate : challenges and opportunities. Semantic Web Applications and Tools for Health Care and Life Sciences, Feb 2024, Leiden, Netherlands. Zenodo, 2024, ⟨10.5281/zenodo.10822156⟩. ⟨hal-04540040⟩
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