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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise , et al.
Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩
Journal articles hal-00647725v1

Genome size variation and species diversity in salamanders

Bianca Sclavi , John Herrick
Journal of Evolutionary Biology, 2019, 32 (3), pp.278-286. ⟨10.1111/jeb.13412⟩
Journal articles hal-02111158v1

Selective trihydroxylated azepane inhibitors of NagZ, a glycosidase involved in Pseudomonas aeruginosa resistance to β-lactam antibiotics

Jaufret Bouquet , Dustin King , G. Vadlamani , G. Benzie , Bogdan Iorga , et al.
Organic & Biomolecular Chemistry, 2017, 15 (21), pp.4609-4619. ⟨10.1039/C7OB00838D⟩
Journal articles hal-02176734v1
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Decadal biomass increment in early secondary succession woody ecosystems is increased by CO2 enrichment

Anthony Walker , Martin de Kauwe , Belinda Medlyn , Sönke Zaehle , Colleen Iversen , et al.
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-08348-1⟩
Journal articles hal-02374049v1

Tableau sequences, open diagrams, and Baxter families

Sophie Burrill , Julien Courtiel , Eric Fusy , Stephen Melczer , Marni Mishna
European Journal of Combinatorics, 2016, 58, pp.144 - 165. ⟨10.1016/j.ejc.2016.05.011⟩
Journal articles hal-01394155v1

Benchmarking RNA secondary structure comparison algorithms

Julien Allali , Yves d'Aubenton-Carafa , Cedric Chauve , Alain Denise , Christine Drevet , et al.
JOBIM'08, 2008, Lille, France. pp.67-68
Conference papers hal-00375710v1
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On Resolvable Mixed Path Designs

Jean-Claude Bermond , Katherine Heinrich , Min-Li Yu
European Journal of Combinatorics, 1990, 11 (4), pp.313-318. ⟨10.1016/S0195-6698(13)80132-1⟩
Journal articles hal-03189957v1

Digital identities in tension : between autonomy and control

Armen Khatchatourov , Pierre-Antoine Chardel , Andrew Feenberg , Gabriel Périès
Armen Khatchatourov. ISTE editions, 5, pp.198, 2019, Interdisciplinarity, sciences and humanities collection. Innovation and responsability set, 978-1-78630-411-7. ⟨10.1002/9781119629610⟩
Books hal-03125883v1
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Existence of Resolvable Path Designs

Jean-Claude Bermond , Katherine Heinrich , Min-Li Yu
European Journal of Combinatorics, 1990, 11 (3), pp.205-211. ⟨10.1016/S0195-6698(13)80120-5⟩
Journal articles hal-02974661v1
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The complementarity of luminescence dating methods illustrated on the Mousterian sequence of the Roc de Marsal: A series of reindeer-dominated, Quina Mousterian layers dated to MIS 3

Guillaume Guérin , Marine Frouin , Joséphine Tuquoi , K.J. Thomsen , Paul Goldberg , et al.
Quaternary International, 2017, 433, pp.102 - 115. ⟨10.1016/j.quaint.2016.02.063⟩
Journal articles hal-01863476v1
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ecceTERA: Comprehensive gene tree-species tree reconciliation using parsimony

Edwin Jacox , Cedric Chauve , Gergely J Szöllősi , Yann Ponty , Celine Scornavacca
Bioinformatics, 2016, 32 (13), pp.2056-2058. ⟨10.1093/bioinformatics/btw105⟩
Journal articles hal-01276903v1
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Precipitation changes in the Mediterranean basin during the Holocene from terrestrial and marine pollen records: a model-data comparison

Odile Peyron , Nathalie Combourieu-Nebout , David Brayshaw , Simon Goring , Valérie Andrieu-Ponel , et al.
Climate of the Past, 2017, 13 (3), pp.249-265. ⟨10.5194/cp-13-249-2017⟩
Journal articles hal-01681535v1

The BRaliBase dent - a tale of benchmark design and interpretation.

Benedikt Löwes , Cedric Chauve , Yann Ponty , Robert Giegerich
Briefings in Bioinformatics, 2017, 18 (2), pp.306--311. ⟨10.1093/bib/bbw022⟩
Journal articles hal-01273406v1
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Learning to Group Discrete Graphical Patterns

Zhaoliang Lun , Changqing Zou , Haibin Huang , Evangelos Kalogerakis , Ping Tan , et al.
ACM Transactions on Graphics, 2017, 11
Journal articles hal-01703062v1
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Tableau sequences, open diagrams, and Baxter families

Sophie Burrill , Julien Courtiel , Eric Fusy , Stephen Melczer , Marni Mishna
Preprints, Working Papers, ... hal-01188328v1

Proceedings of the 1st workshop on Computational Methods for Structural RNAs

Fabrice Jossinet , Yann Ponty , Jérôme Waldispühl
Jossinet, Fabrice; Ponty, Yann; Waldispühl, Jérôme. McGill University, pp.76, 2014, 978-2-9550187-0-5. ⟨10.15455/CMSR.2014.0000⟩
Books hal-01071417v1
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Age and Glaucoma-Related Characteristics in Retinal Nerve Fiber Layer and Choroid: Localized Morphometrics and Visualization Using Functional Shapes Registration

Sieun Lee , Morgan L. Heisler , Karteek Popuri , Nicolas Charon , Benjamin Charlier , et al.
Frontiers in Neuroscience, 2017, 11, ⟨10.3389/fnins.2017.00381⟩
Journal articles hal-01817576v1

Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress β-lactam antibiotic resistance

Marielle Tamigney Kenfack , Marcelina Mazur , Teerapat Nualnoi , Teresa Shaffer , Abba Ngassimou , et al.
Protein Science, 2017, 26 (6), pp.1161-1170. ⟨10.1002/pro.3166⟩
Journal articles hal-02176780v1
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Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models

Cedric Chauve , Yann Ponty , Michael Wallner
Journal of Mathematical Biology, 2019, 80 (5), pp.1353--1388. ⟨10.1007/s00285-019-01465-x⟩
Journal articles hal-02169271v1
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Taming reluctant random walks in the positive quadrant

Jeremie Lumbroso , Marni Mishna , Yann Ponty
GASCOM - 10th conference on random generation of combinatorial structures - 2016, Jun 2016, Bastia, France. pp.99 -- 114, ⟨10.1016/j.endm.2017.05.008⟩
Conference papers hal-01291164v1
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A hybrid combinatorial method for docking single stranded RNAs in a protein pockect at the thermodynamic equilibrium

Chinmay Singhal , Yann Ponty , Isaure Chauvot de Beauchêne
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2018, Marseille, France
Conference papers hal-02394529v1
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Climate changes in the central Mediterranean and Italian vegetation dynamics since the Pliocene

Nathalie Combourieu-Nebout , Adele Bertini , Elda Russo-Ermolli , Odile Peyron , Stefan Klotz , et al.
Review of Palaeobotany and Palynology, 2015, 218, pp.127 - 147. ⟨10.1016/j.revpalbo.2015.03.001⟩
Journal articles hal-01806165v1
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Hydrogen isotopic fractionations during syntheses of lipid biomarkers in the seeds of broomcorn millet (Panicum miliaceum L.) under controlled environmental conditions

Jérémy Jacob , Nicolas Bossard , Thierry Bariac , Valery Terwilliger , Philippe Biron , et al.
Organic Geochemistry, 2021, 154, pp.104221. ⟨10.1016/j.orggeochem.2021.104221⟩
Journal articles insu-03175971v1
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Designing for Kinesthetic Awareness: Revealing User Experiences through Second-Person Inquiry

Jules Françoise , Yves Candau , Sarah Fdili Alaoui , Thecla Schiphorst
CHI 2017 - ACM Conference on Human Factors in Computing Systems, May 2017, Denver, United States. pp.5171-5183, ⟨10.1145/3025453.3025714⟩
Conference papers hal-01662526v1

Cultivating kinaesthetic awareness through interaction Perspectives from somatic practices and embodied cognition

Yves Candau , Jules Françoise , Sarah Fdili Alaoui , Thecla Schiphorst
MOCO 2017 - 4th International Conference on Movement Computing, Jun 2017, Londres, United Kingdom. pp.1-8, ⟨10.1145/3077981.3078042⟩
Conference papers hal-01680387v1

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach

Cedric Chauve , Yann Ponty , João Paulo Pereira Zanetti
BMC Bioinformatics, 2015, 16 (Suppl 19), pp.S6. ⟨10.1186/1471-2105-16-S19-S6⟩
Journal articles hal-01245495v1
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Atlas-based shape analysis and classification of retinal optical coherence tomography images using the functional shape (fshape) framework

Sieun Lee , Nicolas Charon , Benjamin Charlier , Karteek Popuri , Evgeniy Lebed , et al.
Medical Image Analysis, 2017, 35, pp.570 - 581. ⟨10.1016/⟩
Journal articles hal-01817551v1
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A peak detection method for identifying phase in physiological signals

Nicholas Mitrou , Alexandre Laurin , Taylor Dick , Jessica Inskip
Biomedical Signal Processing and Control, 2017, 31, pp.452 - 462. ⟨10.1016/j.bspc.2016.07.001⟩
Journal articles hal-01380875v1
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Perception! Immersion! Empowerment! Superpowers as Inspiration for Visualization

Wesley Willett , Bon Adriel Aseniero , Sheelagh Carpendale , Pierre Dragicevic , Yvonne Jansen , et al.
IEEE Transactions on Visualization and Computer Graphics, 2022, 28 (1), pp.22-32. ⟨10.1109/TVCG.2021.3114844⟩
Journal articles hal-03342677v1
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Association between blood metals mixtures concentrations and cognitive performance, and effect modification by diet in older US adults

Nasser Laouali , Tarik Benmarhnia , Bruce P. Lanphear , Jennifer Weuve , Michael Mascari , et al.
Environmental Epidemiology (philadelphia, Pa.), 2022, 6 (1), ⟨10.1097/EE9.0000000000000192⟩
Journal articles hal-03604082v1