Recherche - Université Paris-Saclay

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Concerted conformational dynamics and water movements in the ghrelin G protein-coupled receptor

Maxime Louet , Marina Casiraghi , Marjorie Damian , Mauricio Gs Costa , Pedro Renault , et al.
eLife, 2021, 10, pp.e63201. ⟨10.7554/elife.63201⟩
Article dans une revue hal-03407524v1
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Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade

Emilyn Costa Conceição , Guislaine Refrégier , Harrison Magdinier Gomes , Xavier Olessa-Daragon , Francesc Coll , et al.
Infection, Genetics and Evolution, 2019, 73, pp.337--341. ⟨10.1016/j.meegid.2019.06.001⟩
Article dans une revue hal-02169940v1
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Nuclear interacting SET domain protein 1 inactivation impairs GATA1-regulated erythroid differentiation and causes erythroleukemia

Katharina Leonards , Marwa Almosailleakh , Samantha Tauchmann , Frederik Otzen Bagger , Cécile Thirant , et al.
Nature Communications, 2020, 11 (1), pp.2807. ⟨10.1038/s41467-020-16179-8⟩
Article dans une revue inserm-02877781v1
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Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

Clotilde Thery , Kenneth Witwer , Elena Aikawa , Maria Jose Alcaraz , Johnathon Anderson , et al.
Journal of Extracellular Vesicles, 2018, 7 (1), pp.1535750. ⟨10.1080/20013078.2018.1535750⟩
Article dans une revue hal-02323217v1
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Comparison of Dynamic Monitoring Strategies Based on CD4 Cell Counts in Virally Suppressed, HIV-positive Individuals on Combination Antiretroviral Therapy in High-Income Countries: A Prospective, Observational Study

Ellen C Caniglia , Lauren E Cain , Caroline A Sabin , James M Robins , Roger Logan , et al.
The Lancet HIV, 2017, 4 (6), pp.e251-e259. ⟨10.1016/S2352-3018(17)30043-7⟩
Article dans une revue hal-03777512v1

A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit)

Mauricio G S Costa , Charline Fagnen , Catherine Vénien-Bryan , David Perahia
Journal of Chemical Information and Modeling, 2020, 60 (5), pp.2419-2423. ⟨10.1021/acs.jcim.9b01148⟩
Article dans une revue hal-04783662v1

Oral delivery of pancreatitis‐associated protein by Lactococcus lactis displays protective effects in dnbs‐induced colitis model and is able to modulate the composition of the microbiota

Natalia Martins Breyner , Priscilla Carolinne Bagano Vilas Boas , Gabriel Fernandes , Rodrigo D Carvalho , Tatiana Rochat , et al.
Environmental Microbiology, 2019, ⟨10.1111/1462-2920.14748⟩
Article dans une revue hal-02619641v1
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Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP

Rodrigo Carvalho , Aline Vaz , Felipe Luiz Pereira , Fernanda Dorella , Eric Aguiar , et al.
Scientific Reports, 2018, 8, ⟨10.1038/s41598-018-33469-w⟩
Article dans une revue hal-02627479v1
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Prophylactic Faecalibacterium prausnitzii treatment prevents the acute breakdown of colonic epithelial barrier in a preclinical model of pelvic radiation disease

Alexia Lapiere , Mallia Geiger , Véronique Robert , Christelle Demarquay , Sandrine Auger , et al.
Gut microbes, 2020, 12 (1), pp.1-15. ⟨10.1080/19490976.2020.1812867⟩
Article dans une revue hal-03194901v1
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Actin-microtubule cytoskeletal interplay mediated by MRTF-A/SRF signaling promotes dilated cardiomyopathy caused by LMNA mutations

Caroline Le Dour , Maria Chatzifrangkeskou , Coline Macquart , Maria M Magiera , Cécile Peccate , et al.
Nature Communications, 2022, 13 (1), pp.7886. ⟨10.1038/s41467-022-35639-x⟩
Article dans une revue hal-03921784v1

Association Between Anxiety and New Organ Failure, Independently of Critical Illness Severity and Respiratory Status: A Prospective Multicentric Cohort Study

Aurélien Mazeraud , Andrea Polito , Sivanthiny Sivanandamoorthy , Raphaël Porcher , Nicholas Heming , et al.
Critical Care Medicine, 2020, 48 (10), pp.1471-1479. ⟨10.1097/CCM.0000000000004495⟩
Article dans une revue hal-04546591v1

Emulating a trial of joint dynamic strategies: An application to monitoring and treatment of HIV‐positive individuals

Ellen Caniglia , James Robins , Lauren Cain , Caroline Sabin , Roger Logan , et al.
Statistics in Medicine, 2019, 38 (13), pp.2428-2446. ⟨10.1002/sim.8120⟩
Article dans une revue hal-02481253v1
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Phenotypic clustering: a novel method for microglial morphology analysis

Franck Verdonk , Pascal Roux , Patricia Flamant , Laurence Fiette , Fernando A. Bozza , et al.
Journal of Neuroinflammation, 2016, 13 (1), pp.153-. ⟨10.1186/s12974-016-0614-7⟩
Article dans une revue pasteur-01389354v1

Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review

Emilyn Costa Conceição , Richard Steiner Salvato , Karen Machado Gomes , Arthur Emil dos Santos Guimarães , Marília Lima da Conceição , et al.
Memórias do Instituto Oswaldo Cruz, 2021, 116, ⟨10.1590/0074-02760200517⟩
Article dans une revue hal-04245111v1

Combination of Aryl Diselenides/Hydrogen Peroxide and Carbon‐Nanotube/Rhodium Nanohybrids for Naphthol Oxidation: An Efficient Route towards Trypanocidal Quinones

Renato de Carvalho , Guilherme Jardim , Augusto Santos , Maria Araujo , Willian Oliveira , et al.
Chemistry - A European Journal, 2018, 24 (57), pp.15227-15235. ⟨10.1002/chem.201802773⟩
Article dans une revue cea-04492414v1

Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria

Barbara Molina-Moya , Saddiq T. Abdurrahman , Laura Madukaji , Michel Kireopori Gomgnimbou , Lizania Spinasse , et al.
Infection and Drug Resistance, 2018, 11, pp.1617--1625. ⟨10.2147/IDR.S166986⟩
Article dans une revue hal-02182324v1
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Induced Pluripotent Stem Cells Enable Disease Modeling and Drug Screening in Calreticulin del52 and ins5 Myeloproliferative Neoplasms

Lise Secardin , Cintia Gomez Limia , Suzana da Silva-Benedito , Larissa Lordier , Mira El-Khoury , et al.
HemaSphere, 2021, 5 (7), pp.e593. ⟨10.1097/HS9.0000000000000593⟩
Article dans une revue hal-03263690v1

Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil

Nayanne Gama Teixeira Dantas , Phillip Noel Suffys , Wânia da Silva Carvalho , Harrison Magdinier Gomes , Isabela Neves De Almeida , et al.
Memórias do Instituto Oswaldo Cruz, 2017, 112 (11), pp.769--774. ⟨10.1590/0074-02760170062⟩
Article dans une revue hal-02191696v1

De novo transcriptome assembly for a non-model species, the blood-sucking bug Triatoma brasiliensis, a vector of Chagas disease

A Marchant , F Mougel , C Almeida , Emmanuelle Jacquin-Joly , J Costa , et al.
Genetica, 2015, 143 (2), pp.225-239. ⟨10.1007/s10709-014-9790-5⟩
Article dans une revue hal-02637858v1

Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil.

Nayanne Gama Teixeira Dantas , Phillip Noel Suffys , Wânia da Silva Carvalho , Harrison Magdinier Gomes , Isabela Neves de Almeida , et al.
BMC Infectious Diseases, 2015, 15 (1), pp.306. ⟨10.1186/s12879-015-1057-y⟩
Article dans une revue hal-01430798v1

Effect of Immediate Initiation of Antiretroviral Treatment in HIV-Positive Individuals Aged 50 Years or Older

Sara Lodi , Dominique Costagliola , Caroline Sabin , Julia Del Amo , Roger Logan , et al.
Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2017, 76 (3), pp.311--318. ⟨10.1097/QAI.0000000000001498⟩
Article dans une revue hal-03702943v1
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A simple ATAC-seq protocol for population epigenetics

Ronaldo de Carvalho Augusto , Olivier REY , Céline Cosseau , Cristian Chaparro , Jeremie Vidal-Dupiol , et al.
Wellcome Open Research, 2021, 5, pp.121. ⟨10.12688/wellcomeopenres.15552.2⟩
Article dans une revue hal-03145575v2
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Assessing the quality of evidence in studies estimating prevalence of exposure to occupational risk factors: The QoE-SPEO approach applied in the systematic reviews from the WHO/ILO Joint Estimates of the Work-related burden of disease and Injury

Frank Pega , Natalie Momen , Diana Gagliardi , Lisa Bero , Fabio Boccuni , et al.
Environment International, 2022, 161, pp.107136. ⟨10.1016/j.envint.2022.107136⟩
Article dans une revue hal-03604184v1

Genetic diversity of Mycobacterium tuberculosis from Pará, Brazil, reveals a higher frequency of ancestral strains than previously reported in South America

Emilyn Costa Conceicao , Nalin Rastogi , David Couvin , Maria Luiza Lopes , Ismari Perini Furlaneto , et al.
Infection, Genetics and Evolution, 2017, 56, pp.62 - 74. ⟨10.1016/j.meegid.2017.10.021⟩
Article dans une revue pasteur-01652094v1

Commonly Prescribed Antiretroviral Therapy Regimens and Incidence of AIDS-Defining Neurological Conditions

Ellen C. Caniglia , Andrew Phillips , Kholoud Porter , Caroline A. Sabin , Alan Winston , et al.
Journal of Acquired Immune Deficiency Syndromes - JAIDS, 2018, 77 (1), pp.102--109. ⟨10.1097/QAI.0000000000001562⟩
Article dans une revue hal-03702939v1
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Assessor burden, inter-rater agreement and user experience of the RoB-SPEO tool for assessing risk of bias in studies estimating prevalence of exposure to occupational risk factors: An analysis from the WHO/ILO Joint Estimates of the Work-related Burden of Disease and Injury

Natalie C. Momen , Kai N. Streicher , Denise T. C. da Silva , Alexis Descatha , Monique H. W. Frings-Dresen , et al.
Environment International, 2022, 158, ⟨10.1016/j.envint.2021.107005⟩
Article dans une revue hal-03511988v1
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MDexciteR: Enhanced Sampling Molecular Dynamics by Excited Normal Modes or Principal Components Obtained from Experiments

Mauricio Costa , Paulo R Batista , Antoniel Gomes , Leonardo S Bastos , Maxime Louet , et al.
Journal of Chemical Theory and Computation, 2023, 19 (2), pp.412-425. ⟨10.1021/acs.jctc.2c00599⟩
Article dans une revue hal-04277555v1

Conformational Equilibrium of CDK/Cyclin Complexes by Molecular Dynamics with Excited Normal Modes

Nicolas Floquet , Mauricio g.S. Costa , Paulo r. Batista , Pedro Renault , Paulo m. Bisch , et al.
Biophysical Journal, 2015, 109 (6), pp.1179-1189. ⟨10.1016/j.bpj.2015.07.003⟩
Article dans une revue hal-02322259v1
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The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: Providing guidelines for Quality Assurance when working on membranes

Edgar Abadia , Jian Zhang , Viviana Ritacco , Kristin Kremer , Raymond Ruimy , et al.
BMC Infectious Diseases, 2011, 11 (1), pp.110. ⟨10.1186/1471-2334-11-110⟩
Article dans une revue pasteur-00670610v1
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Chromatin structure changes in Daphnia populations upon exposure to environmental cues – or – The discovery of Wolterecks “Matrix”

Ronaldo de Carvalho Augusto , Aki Minoda , Oliver Rey , Céline Cosseau , Cristian Chaparro , et al.
2020
Pré-publication, Document de travail hal-02991174v1